Makaleler

• Majeed, S.R.; Amin, M.A.; Goren, H.Y.; Dedeoglu, B.; Attaby, F.F.; Soliman, A.A. Synthesis, characterization, ADME, molecular docking, in silico structural and mechanistic studies and biological activities of Pt(IV) complexes based on diamine derivatives. Applied Organometallic Chemistry, 2025, accepted.

• Cilesiz, U.; Sincer, E.Y.; Dedeoglu, B.; Aviyente, V. Enthalpy of Formation of Polycyclic Aromatic Hydrocarbons and Heterocyclic Aromatic Compounds. ACS Omega, 2025, 10 (22), 23433-23439.

• Tunç, G.; Gumusgoz Celik, G.; Canımkurbey, B.; Dedeoglu, B.; Gurek, A.G. p-Phenyleneethynylene unit-conjugated dimeric zinc-phthalocyanines in bulk heterojunction solar cell: A comparative experimental and theoretical study. New Journal of Chemistry, 2025, 49, 8102-8113.

• Gül, E.Y.; Tiryaki, B.; Köse, B.; Öztürk, N.; Okutan, E.; Dedeoglu, B.; Tanrıverdi Eçik, E. Design, synthesis and in vitro evaluations of new cyclotriphosphazenes as safe drug candidates. RSC Medicinal Chemistry, 2025, 16, 2061-2077.

• Dedeoglu, B. Computational assessment of the platinum (II) complex of imidazolidine dioximes substituted with methoxydiglycol units: from activation to DNA binding. BAUN J. Inst. Sci. Technol., 2025, 27(1), 218-227.
• Cetin, E.; Guclu, T.F.; Kantarcioglu, I.; Gaszek, I.K.; Toprak, E.; Atilgan, A.R.; Dedeoglu, B.;* Atilgan, C.* Kinetic Barrier to Enzyme Inhibition is Manipulated by Dynamical Local Interactions in E. coli DHFR. J. Chem. Inf. Model., 2023, 63, 4839-4849.
• Gümüşgöz, G.; Dedeoglu, B.; Gül, A.G.; Zorlu, Y.; Ayhan, M.M. Enhancing supramolecular assembly in BODIPY derivatives: Harnessing halogen bonding for cocrystal design. Crsytal Growth and Design, 2023, 23 (10), 7285-7294.
• Emirik, Ö.F.; Şanlı, C.; Ahsen, V.; Gürek, A.G.; Dedeoglu, B.* Theoretical investigation of the hydrolysis and DNA binding of platinum (II) complexes of imidazolidine dioximes. Mol. Phys., 2023, 121 (22), e2236244.
• Dedeoglu, B.; Gürek, A.G.; Zorlu, Y.; Ayhan, M.M.; Engineering supramolecular helical assemblies via interplay between carbon (sp) tetrel and halogen bonding interactions. Phys. Chem. Chem. Phys., 2023, 25 (16), 11493-11500.
• Ates, Ö.D.; Tunç, G.; Şenocak, A.; Ayhan, M.M.; Gürek, A.G. The chemical and electrochemical stimuli viologen substituted phtalocyanine with tunable optical properties. Turkish Journal of Chemistry, 2023, 47 (5), 1149-1159.

• Koca Fındık, B.; Çilesiz, U.; Bali, S.K.; Atılgan, C.; Aviyente, V.; Dedeoglu, B.*;Computational Assessment of Iron Release from the N- and C- Lobes of Human Serum Transferrin. OBC, 2022, 20, 8766-8774.

• Haghmoradi, N.; Sarı, Z.T.; Kırlıoğlu, A.C.; Yarar Kaplan, B.; Dedeoglu, B.; Zahedimaram, P.; Abdolhosseinzadeh, S.; Alkan Gürsel, S. Co2+, Fe2+, and Ni2+: Modifiers for Photocatalytic Deposition of Highly Active Pt on Graphene-based Supports. ACS Appl. Energy Mater. 2022, 5, 11, 13939–13951.
• Soysal, E.N.; Findik, V.; Dedeoglu, B.; Aviyente, V.; Tantillo, D.J. Theoretical Investigation of the Biogenetic Pathway for Formation of Antibacterial Indole Alkaloids from Voacanga Africana. ACS Omega, 2022, 7, 35, 31591–31596.
• Topaloğlu-Aksoy, B.; Dedeoglu, B.; Zorlu, Y.; Ayhan, M.M.; Çoşut, B. Exploring Halogen···Halogen Interactions in Supramolecular Self-Assembly of BODIPY Networks. CrystEngComm, 2022, 24, 5630-5641.

• Tunç, G.; Canımkurbey, B.; Dedeoglu, B.; Zorlu, Y.; Eryılmaz, S.; Gürek, A.G. Synthesis, Crystal Structure and Electronic Applications of Monocarboxylic Acid Substituted Phthalonitrile Derivatives Combined with DFT studies. J.Mol. Struct., 2021, 1240, 130545.

• Ayhan, M.M; Özcan, E.; Dedeoglu, B.; Chumakov, Y.; Zorlu, Y.; Coşut, B. Carbon (sp3) tetrel bonding mediated BODIPY supramolecular assembly via unprecedented synergy of Csp3⋯N and Csp3⋯F pair interactions. CrystEngComm, 2021, 23, 268-272.
• Özcan, E.; Dedeoglu, B.; Chumakov, Y.; Gürek, A.G; Zorlu, Y.; Coşut, B.; Ayhan, M.M Halogen‐Bonded BODIPY Frameworks with Tunable Optical Features. Chem. Eur.J., 2021, 27, 1603 –1608.
• Özcan, E.; Dedeoglu, B.; Chumakov, Y.; Zorlu, Y.; Coşut, B.; Ayhan, M.M. Modulation of supramolecular self-assembly of BODIPY tectons via halogen bonding. CrystEngComm, 2021, 23, 6365-6375.
• Avcı, O.N.; Catak, S.; Dereli, B.; Aviyente, V.; Dedeoglu, B. Elucidation of the Mechanism of Silver-Catalyzed Inverse Electron-Demand Diels-Alder (IEDDA) Reaction of 1,2-Diazines and Siloxy Alkynes. ChemCatChem, 2020, 12, 366–372.
• Kocasoy, V., Dedeoglu, B., Demir-Ordu, Oznur, Aviyente, V. Influence of odd–even effect and intermolecular interactions in 2D molecular layers of bisamide organogelators. RSC Advances, 2018, 8, 35195.

• Abdizadeh, H.; Atilgan, A.R.; Atilgan, C.; Dedeoglu, B. Computational approaches for deciphering equilibrium and kinetic properties of iron transport proteins. Metallomics, 2017, 9, 1513-1533.
• Ugur, I.; Agopcan Cinar, S.; Dedeoglu, B.; Aviyente, V.; Hawthorne, M. F.; Liu, P.; Liu, F.; Houk, K.N.; Jiménez-Osése, G. 1,3-Dipolar Cycloaddition Reactions of Low-Valent Rhodium and Iridium Carboranyl and Cyclopentadienyl Complexes with Arylnitrile N-Oxides. Journal of Organic Chemistry, 2017, 82, 5096–5101.

• Agopcan Cinar, S.; Guven, M. N.; Eren, T. N.; Cesur, B.; Aleksanyan, M.; Dedeoglu, B.; Okte, N.; Aviyente, V.; Morlet-Savary, F.; Lalevee, J. Structure-Reactivity Relationships of Novel Monomeric Photoinitiators. Journal of Photochemistry and Photobiology A: Chemistry, 2016, 329, 77-87.
• Tanriver, G.; Dedeoglu, B.; Catak, S.; Aviyente, V. Computational Studies on Cinchona Alkaloid-Catalyzed Asymmetric Organic Reactions. Accounts of Chemical Research, 2016, 49, 1250 – 1262.

• Dedeoglu, B.; Catak, S.; Yildirim, A.; Bolm, C.; Aviyente, V. Cinchona Alkaloid Catalyzed Asymmetric Desymmetrization of meso-Cyclic Anhydrides: The Origins of Stereoselectivity. ChemCatChem, 2015, 7, 4173 – 4179.

• Schmitt, B.; Sabanci, N.; Dedeoglu, B.; Aviyente, V.; Hosten, E.; Gerber, T.I.A.; Habarurema, G. Rhenium(V) Complexes Containing Mono- and Tridentate Imido Ligands: Crystal Structures, Spectroscopic Results and DFT Optimization. S. Afr. J. Chem., 2014, 67, 189–197.
• Dedeoglu, B.; Monari, A.; Etienne, T.; Aviyente, V.; Özen, A.S. Detection of Nitroaromatic Explosives Based on Fluorescence Quenching of Silafluorene- and Silole-Containing Polymers: A Time Dependent-Density Functional Theory Study. J. Phys. Chem. C, 2014, 118, 23946 - 23953.
• Dedeoglu, B.; Aviyente, V.; Özen, A.S. Computational Insight into the Explosive Detection Mechanisms in Silafluorene- and Silole-Containing Photoluminescent Polymers. J. Phys. Chem. C, 2014, 118, 6385−6397.

• Dedeoglu B., Ugur I., Degirmenci I, Aviyente V., Barcin B., Cayli G., Acar H., First RAFT polymerization of captodative 2-acetamidoacrylic acid (AAA) monomer: An experimental and theoretical study. Polymer, 2013, 54, 5122-5132.

• Cenker, Ç. C.; Bomans, P. H. H.; Friedrich, H.; Dedeoglu, B.; Aviyente, V.; Olsson, U.; Sommerdijk, N.A.J.M.; Bucak, S. Peptide nanotube formation: a crystal growth process. Soft Matter, 2012, 8, 7463-7470.
• Ince, H.H.; Dedeoglu, B.; Gul, S.; Aviyente, V.; Coldham, I. Selectivity in the aggregates of the chiral organolithium N-Boc-2-lithiopiperidine with a chiral ligand: A DFT study. Molecular Physics, 2012, 110, 353–359.

• Dedeoglu, B.; Catak, S.; Houk, K.N.; Aviyente, V. A Theoretical Study of the Mechanism of the Desymmetrization of Cyclic meso-Anhydrides by Chiral Amino Alcohols. ChemCatChem, 2010, 2, 1122–1129.

Projeler

• GTÜ BAP 2023-A-105-10, Heteroatom Merkezli Çok Halkalı Konjüge pi Sistemleri ile Bu Sistemlerin Optoelektronik ve Gaz Tutma Özelliklerinin Hesapsal Yaklaşımlarla İncelenmesi,Yürütücü, 2023-2025.

• TÜBİTAK 2218, 118C487, Dihidrofolat redüktaz enziminde trimethoprim direncine yol açan mutasyona özgü tasarlanan yeni ve etkin inhibitörün etki mekanizmasının incelenmesi, Yürütücü, 2021-2022.
• TÜBİTAK 1001, 118Z279, Yeni İmidazolidindion Türevlerinin ve Platin Komplekslerinin Sentezi ve İnsan Kanser Hücrelerinde Anti-Tümör Etkilerinin Araştırılması, Araştırmacı, 2018 - 2020.
• GTÜ BAP 2018-A105-32, Siklokatilma Reaksiyonlarında Gümüş Katalizörünün Etkisinin Hesapsal Yöntemlerle İncelenmesi, Yürütücü, 2018 - 2019.

Ders Kodu	Ders Adı

Öğrenciler

Hasan Yavuz GÖREN, GTU, Kimya, Lisans

Ceren ARSLANTAŞ, GTU, Yüksek Lisans

Ömer MEYDAN, GTU,Yüksek Lisans

Seyyide ÖZTÜRK, GTU,Yüksek Lisans

Mezunlar

Ömer Faruk EMİRİK, GTU, Kimya, 2023 (Doktora)

Cansu KÜÇÜKPOLAT, GTU, Kimya, 2021 (Yüksek Lisans)

• Doktora: Kimya, Boğaziçi Üniversitesi, 2015
• Yüksek lisans: Kimya, Boğaziçi Üniversitesi, 2009
• Lisans: Kimya, Boğaziçi Üniversitesi, 2007

2016 Boğaziçi Üniversitesi Doktora Tez Ödülü

Ziyaretçi Araştırmacı:
2019 Temmuz, Stockholm University
2013 Temmuz, University of Lorraine
2008 Ağustos, University of California, Los Angeles