Publications

 

Books

Aksan Kurnaz I, Salman Ünver S (2020).  Biyoteknoloji Çağına Hoş Geldiniz!  ABA Publishing, Istanbul, Turkey.  ISBN: 978-625-7718-05-9 

 

Journal Articles

2021

Sogut MS, Venugopal C, Kandemir B, Dag U, Mahendram S, Singh S, Gulfidan G, Arga KY, Yilmaz B, Kurnaz IA. ETS-Domain Transcription Factor Elk-1 Regulates Stemness Genes in Brain Tumors and CD133+ BrainTumor-Initiating Cells. Journal of Personalized Medicine. 2021; 11(2):125. https://doi.org/10.3390/jpm11020125

Babal YK, Kandemir B, Kurnaz IA. Gene Regulatory Network of ETS Domain Transcription Factors in Different Stages of Glioma. Journal of Personalized Medicine. 2021; 11(2):138. https://doi.org/10.3390/jpm11020138

Arisan ED, Rencuzogullari O, Cieza-Borrella C, Miralles Arenas F, Dwek M, Lange S, Uysal-Onganer P. MiR-21 Is Required for the Epithelial-Mesenchymal Transition in MDA-MB-231 Breast Cancer Cells. Int J Mol Sci. 2021 Feb 4;22(4):1557. doi: 10.3390/ijms22041557. PMID: 33557112.

Rencuzogulları O, Yerlikaya PO, Gürkan AÇ, Arısan ED, Telci D. Palbociclib negatively regulates fatty acid synthesis due to upregulation of AMPKα and miR-33a levels to increase apoptosis in Panc-1 and MiaPaCa-2 cells. Biotechnol Appl Biochem. 2021 Feb 3. doi: 10.1002/bab.2113. Epub ahead of print. PMID:
33538066.

Lange S, Arisan ED, Grant GH, Uysal-Onganer P. MicroRNAs for Virus Pathogenicity and Host Responses, Identified in SARS-CoV-2 Genomes, May Play Roles in Viral-Host Co-Evolution in Putative Zoonotic Host Species. Viruses. 2021 Jan 16;13(1):117. doi: 10.3390/v13010117. PMID: 33467206; PMCID: PMC7830670.

Bortecine Sevgin, Mervenur Coban, Özge Rencuzogullari, Ajda Coker Gurkan, Pinar Obakan Yerlikaya, Pinar Uysal Onganer, Elif Damla ARISAN. AMPK is the key target for the CDK4/6 inhibitors mediated therapeutic responses in PANC-1 and MIA PaCa-2 pancreatic cancer cell lines. https://www.mdpi.com/2673-7140/1/1/5

Mortoglou M, Wallace D, Buha Djordjevic A, Djordjevic V, Arisan ED, Uysal-Onganer P. MicroRNA-Regulated Signaling Pathways: Potential Biomarkers for Pancreatic Ductal Adenocarcinoma. Stresses. 2021; 1(1):30-47. https://doi.org/10.3390/stresses1010004

Çubuk, H., Özbil, M. “Comparison of Clinically Approved Molecules on SARS-CoV-2 Drug Target Proteins: A Molecular Docking Study” Turk. J. Chem, 45, 35-41, 2021. doi:10.3906/kim-2008-35   journals.tubitak.gov.tr/chem/issues/kim-21-45-1/kim-45-1-5-2008-35.pdf

Cubuk, H., Ozbil, M., Hatir, P.C. “Computational analysis of functional monomers used in molecular imprinting for promising COVID-19 detection” Comput. Theor. Chem., 11325, 2021. https://doi.org/10.1016/j.comptc.2021.113215.   www.sciencedirect.com/science/article/pii/S2210271X21000748

Fareed, F.M.A, Korulu, S., Özbil, M., Çapan, Ö.Y. “HNF1A-MODY Mutations in Nuclear Localization Signal Impair HNF1A-Import Receptor KPNA6 Interactions” Protein J.2021. doi:10.1007/s10930-020-09959-0 ​link.springer.com/article/10.1007/s10930-020-09959-0

2020

Osipitan, O., Yildiz-Kutman, B., Watkins, S., Brown, P., & Hanson, B. (2020). Impacts of repeated glyphosate use on growth of orchard crops. Weed Technology, 34(6), 888-896. doi:10.1017/wet.2020.85

Sevinçli, Z.Ş., Duran, G.N., Özbil, M., Karalı, N. “Synthesis, molecular modeling and antiviral activity of novel 5-fluoro-1H-indole-2,3-dione 3-thiosemicarbazones ”  Bioorg. Chem., 2068, 31499, 2020. https://onlinelibrary.wiley.com/doi/full/10.1002/ardp.201900028

Muge Isleten Hosoglu, Yonca Karagul-Yuceer, Onur Guneser. Aroma characterization of heterotrophic microalgae Crypthecodinium cohnii using solid-phase microextraction and gas chromatography–mass spectrometry/olfactometry during different growth phases. Algal research, Vol. 49. 2020.

Katarzyna SWIĄDER, Karina BIALEK, Muge ISLETEN HOSOGLU. Varieties of date palm fruits (phoenixdactylifera l.), their characteristics and cultivation. Technological Progress In Food Processing, 173-179. 2020.

Arisan ED, Dart A, Grant GH, et al. The Prediction of miRNAs in SARS-CoV-2 Genomes: hsa-miR Databases Identify 7 Key miRs Linked to Host Responses and Virus Pathogenicity-Related KEGG Pathways Significant for Comorbidities. Viruses. 2020;12(6):E614. Published 2020 Jun 4. doi:10.3390/v12060614.https://www.mdpi.com/1999-4915/12/6/614

Adacan K, Obakan-Yerlikaya P, Arisan ED, Coker-Gurkan A, Kaya RI, Palavan-Unsal N. Epibrassinolide-induced autophagy occurs in an Atg5-independent manner due to endoplasmic stress induction in MEF cells [published online ahead of print, 2020 May 24]. Amino Acids. 2020;10.1007/s00726-020-02857-w. doi:10.1007/s00726-020-02857-w. https://link.springer.com/article/10.1007/s00726-020-02857-w

Arısan ED, Rencuzogullari O, Coban M, Sevgin B, Pinar Obakan Yerlikaya, Ajda Çoker Gürkan, and Narçin Palavan Unsal The role of the PI3K/AKT/mTOR signaling axis in the decision of the celastrol-induced cell death mechanism related to the lipid regulatory pathway in prostate cancer cells, Phytotherapy letters

Elif Damla Arisan, Ozge Rencuzogullari; Buse Keskin; Guy H. Grant; Pinar Uysal-Onganer. Wnt-11 expression regulates epithelial-mesenchymal transition and neuroendocrine-like differentiation via JNK pathway in prostate cancer. Biology (ISSN 2079-7737). https://www.mdpi.com/2079-7737/9/7/142

Elif Damla Arisan, Pinar Uysal Onganer, Sigrun Lange. Putative roles for Peptidylarginine Deiminases in COVID-19. International Journal of Molecular Sciences. Peptidylarginine Deiminases and Protein Deimination in Health and Disease Special Issue. 28 June 2020. https://www.mdpi.com/1422-0067/21/13/4662

Arisan, E.D., Freitas, I.L., Pazoki, K., Rahim, S. and Uysal Onganer, P. 2020. The Role of Differentially Expressed miRNAs and Potential miRNA-mRNA Regulatory Network in Prostate Cancer Progression and Metastasis. Biomedical Journal of Technical and Scientific Research. 25 (4), pp. 19382 19387. doi:10.26717/BJSTR.2020.25.004241. https://biomedres.us/fulltexts/BJSTR.MS.ID.004241.php

Arisan, E.D., Rencuzogullari, O., Freitas, I.L., Radzali, S., Keskin, B., Kothari, A., Warford, A. and Uysal Onganer, P. 2020. Upregulated Wnt-11 and miR-21 Expression Trigger Epithelial Mesenchymal Transition in Aggressive Prostate Cancer Cells . Biology. 9, p. 52. doi:10.3390/biology9030052. https://www.mdpi.com/2079-7737/9/3/52

2016

Kandemir B, Dag U, Gungor BB, Durasi IM, Erdogan B, Kayacan Y, Sahin E, Sezerman U, Aksan Kurnaz I (2016). Identification of novel transcriptional targets of Pea3 in SH-SY5Y neuroblastoma cells. PLoS One 12(2):e0170585.http://dx.doi.org/10.1371/journal.pone.0170585