Publications
Books
2022
Biodegradable Waste Management in the Circular Economy: Challenges and Opportunities: Chapter 1 Circular Bioeconomy and Sustainability Işıl Aksan Kurnaz, Elif Damla Arisan, M. Levent Kurnaz Book Editor(s): Malgorzata Kacprzak,Eleonore Attard,Kari-Anne Lyng,Helena Raclavska,BalRam Singh,Eyob Tesfamariam,Franck Vandenbulck. First published: 05 July 2022 https://doi.org/10.1002/9781119679523.ch1
Hastalıkta ve Sağlıkta Hücre Ölümü - Mekanizmaları ve Deneysel Araştırma Modelleri” Elif Damla ARISAN, Bölüm 4.5. HÜCRE ÖLÜMÜNÜN CAENORHABDITIS ELEGANS MODEL ORGANİZMASINDA İNCELENMESİ ISBN numarası: 978-605-73554-1-6 Kitap editörleri: Prof. Dr. Semra Koçtürk, Prof. Dr. Seda Vatansever 2022
Cakmak I., Brown P., Colmenero-Flores J.M., Husted S., Kutman B.Y., Nikolic M., Rengel Z, Schmidt S.B., and Zhao F.J. (2022) Chapter 7: Micronutrients. In: Rengel Z, Cakmak I, White P (Eds.) Marschner's Mineral Nutrition of Plants, 4th Ed. Academic Press. Paperback ISBN: 9780128197738, eBook ISBN: 9780323853521
Kutman UB. (2022) Chapter 9: Nutrition and Quality. In: Rengel Z, Cakmak I, White P (Eds.) Marschner's Mineral Nutrition of Plants, 4th Ed. Academic Press. Paperback ISBN: 9780128197738, eBook ISBN: 9780323853521
Aksan Kurnaz I, Arısan ED, Kurnaz ML (2022). “Chapter1, Circular Bioeconomy and Sustainability”, in Biodegradable Waste Management in the Circular Economy: challenges and opportunities, ed. Kacprzak M, Attard E et al, Wiley Pub, ISBN 978-1-119-67984-4
Kandemir B, Ertural B, Cicek BN, Sonmez E, Aksan Kurnaz I, Savasan Sogut M, Ari Uyar O (2022). Chapter 14 “Sinirbilim”, Biyomedikal Mühendisliğine Giriş, Ed. İsmail Devecioğlu, Nobel Akademik Yayıncılık ISBN 978-625-417-499-5
Aksan Kurnaz I (2022). Volume 1 Chapter 4 “Yapı”, Viroloji, Ed. Hikmet Geçkil, Palme Yayıncılık
Aksan Kurnaz I (2022). Volume 2 Chapter 12 “İnsan Bağışıklık Yetmezliği Virüsü Tip 1 Patojenezi”, Viroloji, Ed. Hikmet Geçkil, Palme Yayıncılık
Kurnaz I, Ertural B, Cicek BN (2022). Chapter 1.2.5 Mitotik Katastrof, in Hastalıkta ve Sağlıkta Hücre Ölümü Mekanizmaları ve Deneysel Araştırma Modelleri, Yayınevi, İzmir; ISBN 978-605-73554-1-6
Altun Z, Kurnaz I (2022). Editörler Chapter II, in Hastalıkta ve Sağlıkta Hücre Ölümü Mekanizmaları ve Deneysel Araştırma Modelleri, Yayınevi, İzmir; ISBN 978-605-73554-1-6
Kurnaz I, Sonmez E, Yigit EN (2022). Chapter 2.2 Nörodejenerasyon, in Hastalıkta ve Sağlıkta Hücre Ölümü Mekanizmaları ve Deneysel Araştırma Modelleri, Yayınevi, İzmir; ISBN 978-605-73554-1-6
Vatansever HS, Kurnaz I (2022). Editörler Chapter II, in Hastalıkta ve Sağlıkta Hücre Ölümü Mekanizmaları ve Deneysel Araştırma Modelleri, Yayınevi, İzmir; ISBN 978-605-73554-1-6
Babal YK, Sonmez E, Yigit EN, Beklen H, Gulfidan G, Arga KY, Kurnaz I (2022). Chapter 3.7.Biyoinformatik ve Yeni Nesil Dizileme, in Hastalıkta ve Sağlıkta Hücre Ölümü Mekanizmaları ve Deneysel Araştırma Modelleri, Yayınevi, İzmir; ISBN 978-605-73554-1-6
Sonmez E, Yigit EN, Kurnaz I (2022). Chapter 4.8. In vitro Parkinson ve Huntington Hastalık Modelleri, in Hastalıkta ve Sağlıkta Hücre Ölümü Mekanizmaları ve Deneysel Araştırma Modelleri, Yayınevi, İzmir; ISBN 978-605-73554-1-6
2020
Kutman B.Y. (2020). Chapter 3: Tarımsal Biyoteknoloji, In: Aksan Kurnaz I, Salman Ünver S (Eds.) Biyoteknoloji Çağına Hoş Geldiniz!, ABA Publishing, Istanbul, Turkey. ISBN: 978-625-7718-05-9
Aksan Kurnaz I, Salman Ünver S (2020). Biyoteknoloji Çağına Hoş Geldiniz! ABA Publishing, Istanbul, Turkey. ISBN: 978-625-7718-05-9
Journal Articles
2023
Habibe Kurt, Muge Isleten Hosoglu, Onur Guneser, Yonca Karagul-Yuceer. 2023. Influence of Different Bacteria Species in Chemical Composition and Sensory Properties of Fermented Spirulina. Food Chemistry. Vol. 400. 133994. https://doi.org/10.1016/j.foodchem.2022.133994
Linhares Y, Kaganski A, Agyare C, Kurnaz IA, Neergheen V, Kolodziejczyk B, Kedra M, Wahajuddin M, El-Youssef L, dela Cruz TE, Baran Y, Pesic M, Shrestha U, Bakiu R, Allard PM, Rybtsov S, Pieri M, Siciliano V, Bueso YF (2023). Biodiversity: the overlooked source of human health. Trends Molec Med 1860; doi: 10.1016/j.molmed.2022.12.002
Yigit EN, Sonmez E, Cakir ZB, Aksan Kurnaz I, Cakir T (2023) Transcriptome study identifies quercetin and rutin as repurposed drugs for Parkinson Disease in in vitro 6-OHDA model. Molec Omics doi: 10.1039/D2MO00267A
2022
Mortoglou M, Miralles F, Arisan ED, Dart A, Jurcevic S, Lange S, Uysal- Onganer P. microRNA-21 Regulates Stemness in Pancreatic Ductal Adenocarcinoma Cells. Int J Mol Sci. 2022 Jan 24;23(3):1275. doi: 10.3390/ijms23031275. PMID: 35163198; PMCID: PMC8835847.
Ayhan-Sahin B, Apaydın ZE, Obakan-Yerlikaya P, Arisan ED, Coker-Gurkan A. Synthesis and characterization of novel ssDNA X-aptamers targeting Growth Hormone Releasing Hormone (GHRH). PLoS One. 2022 Jan 21;17(1):e0260144. doi: 10.1371/journal.pone.0260144. PMID: 35061691; PMCID: PMC8782341.
Kilbas PO, Can ND, Kizilboga T, Ezberci F, Doganay HL, Arisan ED, Dinler Doganay G. CRISPR/Cas9-mediated Bag-1 knockout increased mesenchymal characteristics of MCF-7 cells via Akt hyperactivation-mediated actin cytoskeleton remodelling. PLoS One. 2022 Jan 7;17(1):e0261062. doi:10.1371/journal.pone.0261062. PMID: 34995286; PMCID: PMC8741009.
Serdar Arisan, Pelin Ozfiliz-Kilbas, Ozge Rencuzogullari, Narcin Palavan Unsal, Ajda Coker-Gurkan, Pinar Obakan-Yerlikaya, Pinar Uysal-Onganer, Elif Damla Arisan, Circulating microRNA expression profiles to identify a potential link between prostate cancer and obesity, Human Gene, Volume 34, 2022, 201109, doi.org/10.1016/j.humgen.2022.201109.
Ozge Rencuzogullari, Elif Damla Arisan. Palbociclib suppresses the cancer stem cell properties and cell proliferation through increased levels of miR-506 or miR-150 in Panc-1 and MiaPaCa-2 cells. Turkish J of Biology, doi:10.55730/biy-2203-62, 2022.
Arisan, E. D., Dart, D. A., Grant, G. H., Dalby, A., Kancagi, D. D., Turan, R. D., Yurtsever, B., Karakus, G. S., Ovali, E., Lange, S., & Uysal-Onganer, P. (2022). microRNA 1307 Is a Potential Target for SARS-CoV-2 Infection: An in Vitro Model. ACS omega, 7(42), 38003–38014. https://doi.org/10.1021/acsomega.2c05245
Pinar Obakan Yerlikaya, Leila Mehdizadehtapeh, Ozge Rencuzogullari, Fadina Kuryayeva, Sena Sedef Cevikli, Sevval Ozagar, Sibel Pinar Odabas, Sude Tunckol, Hakan Yetim, Ajda Coker Gurkan, Elif Damla Arisan. Gemcitabine in combination with epibrassinolide enhanced the apoptotic response in an ER stress-dependent manner and reduced the epithelial-mesenchymal transition in pancreatic cancer cells. Turkish J of Biology, 2022. Accepted for publication
Obakan Yerlikaya, P., Adacan, K., Karatug Kacar, A., Coker Gurkan, A., & Arisan, E. D. (2022). Epibrassinolide impaired colon tumor progression and induced autophagy in SCID mouse xenograft model via acting on cell cycle progression without affecting endoplasmic reticulum stress observed in vitro. The international journal of biochemistry cell biology, 155, 106360. Advance online publication. https://doi.org/10.1016/j.biocel.2022.106360
Elif Ilhan, Sumeyye Cesur, Rabia Betul Sulutas, Esra Pilavci, Basak Dalbayrak, Elif Kaya, Elif Damla Arisan, Gulgun Bosgelmez Tinaz, Mustafa Sengor, Ewa Kijeńska-Gawrońska, Faik Nuzhet Oktar, Oguzhan Gunduz, The Role of Multilayer Electrospun Poly(Vinyl Alcohol)/Gelatin nanofibers loaded with Fluconazole and Cinnamaldehyde in the Potential Treatment of Fungal Keratitis, European Polymer Journal, Volume 176, 2022
Yurduseven K, Babal YK, Celik E, Kerman BE, Kurnaz IA. Multiple Sclerosis Biomarker Candidates Revealed by Cell-Type-Specific Interactome Analysis. OMICS. 2022 May;26(5):305-317. doi: 10.1089/omi.2022.0023. Epub 2022 Apr 27. PMID: 35483054.
Coker-Gurkan A, Koyuncu K, Yerlikaya PO, Arisan ED. miR27a, a fine-tuning molecule, interacts with growth hormone (GH) signaling and ornithine decarboxylase (ODC) via targeting STAT5. Amino Acids. 2022 Jan;54(1):71-84. doi: 10.1007/s00726-021-03101-9. Epub 2021 Nov 26. PMID: 34825975.
Onur Guneser, Yonca Karagul-Yuceer, Muge Isleten Hosoglu, Sine Ozmen Togay, Murat Elibol. 2022. Production of flavour compounds from rice bran by yeasy metabolisms of Kluyveromyces marxianus and Debaryomyces hansenii. Braz J Microbiol. doi: 10.1007/s42770-022-00766-6
Busra Sahin, Muge Isleten Hosoglu, Onur Guneser, Yonca Karagul-Yuceer. 2022. Fermented Spirulina products with Saccharomyces and non- Saccharomyces yeasts: Special reference to their microbial, physico-chemical and sensory characterizations. Food Bioscience. Volume 47, 101691
Antika, G., Cinar, Z.Ö., Seçen, E., Özbil, M., Tokay, E., Köçkar, F., Prandi, C., Tumer, T.B. “Strigolactone Analogs: Two New Potential Bioactiphores For Gliblastoma” ACS Chem. Neurosci., 13, 5, 572–580, 2022.
Çubuk, H., Özbil, M., “In silico analysis of SARS-CoV-2 spike protein N501Y and N501T mutation effects on human ACE2 binding” J. Molecular Graphics and Modelling, 116, 108260, 2022.
2021
Mutlu-Durak H. and Yildiz-Kutman B. (2021) Seed Treatment with Biostimulants Extracted from Weeping Willow (Salix babylonica) Enhances Early Maize Growth. Plants 10, 1449.
Nesrin Merve Çelebi Uzkuç, Hasan Uzkuç, Mehmet Mert Berber, Kübra Tarhan Kuzu, Sine Ozmen Togay, Müge Isleten Hosoglu, Aysegül Kırca Toklucu, Saliha B. Kurt, Nurettin Sahiner, Yonca Karagül Yüceer. 2021. Stabilisation of lavender essential oil extracted by microwave-assisted hydrodistillation: Characteristics of starch and soy protein-based microemulsions. Industrial Crops & Products 172 (2021) 114034
Kılmanoglu Hilal, Isleten-Hosoglu, M., Karagul Yuceer, Y. Guneser, O., 2021. Optimization of pretreatment and enzymatic hydrolysis conditions of tomato pomace for production of alcohols and esters by Kluyveromyces marxianus, LWT, 138
Başak Dalbayrak, Ekin Sönmez , Habibe Kurt , Müge İşleten Hoşoğlu , İsrafil Küçük , Hale Saybaşılı, Işıl Kurnaz. 2021. Characterization of a 3D Neuronal-Culture Using Alginate Hydrogels and Optimize For Neuronal Survival and Axon Growth. Natural & Applied Sciences Journal, Vol.3, 8, 71-80.
Sogut MS, Venugopal C, Kandemir B, Dag U, Mahendram S, Singh S, Gulfidan G, Arga KY, Yilmaz B, Kurnaz IA. ETS-Domain Transcription Factor Elk-1 Regulates Stemness Genes in Brain Tumors and CD133+ BrainTumor-Initiating Cells. Journal of Personalized Medicine. 2021; 11(2):125. https://doi.org/10.3390/jpm11020125
Babal YK, Kandemir B, Kurnaz IA. Gene Regulatory Network of ETS Domain Transcription Factors in Different Stages of Glioma. Journal of Personalized Medicine. 2021; 11(2):138. https://doi.org/10.3390/jpm11020138
Arisan ED, Rencuzogullari O, Cieza-Borrella C, Miralles Arenas F, Dwek M, Lange S, Uysal-Onganer P. MiR-21 Is Required for the Epithelial-Mesenchymal Transition in MDA-MB-231 Breast Cancer Cells. Int J Mol Sci. 2021 Feb 4;22(4):1557. doi: 10.3390/ijms22041557. PMID: 33557112.
Rencuzogulları O, Yerlikaya PO, Gürkan AÇ, Arısan ED, Telci D. Palbociclib negatively regulates fatty acid synthesis due to upregulation of AMPKα and miR-33a levels to increase apoptosis in Panc-1 and MiaPaCa-2 cells. Biotechnol Appl Biochem. 2021 Feb 3. doi: 10.1002/bab.2113. Epub ahead of print. PMID:
33538066.
Lange S, Arisan ED, Grant GH, Uysal-Onganer P. MicroRNAs for Virus Pathogenicity and Host Responses, Identified in SARS-CoV-2 Genomes, May Play Roles in Viral-Host Co-Evolution in Putative Zoonotic Host Species. Viruses. 2021 Jan 16;13(1):117. doi: 10.3390/v13010117. PMID: 33467206; PMCID: PMC7830670.
Bortecine Sevgin, Mervenur Coban, Özge Rencuzogullari, Ajda Coker Gurkan, Pinar Obakan Yerlikaya, Pinar Uysal Onganer, Elif Damla ARISAN. AMPK is the key target for the CDK4/6 inhibitors mediated therapeutic responses in PANC-1 and MIA PaCa-2 pancreatic cancer cell lines. https://www.mdpi.com/2673-7140/1/1/5
Mortoglou M, Wallace D, Buha Djordjevic A, Djordjevic V, Arisan ED, Uysal-Onganer P. MicroRNA-Regulated Signaling Pathways: Potential Biomarkers for Pancreatic Ductal Adenocarcinoma. Stresses. 2021; 1(1):30-47. https://doi.org/10.3390/stresses1010004
Duran, G.N., Özbil, M. “Structural rearrangement of Neisseria meningitidis transferrin binding protein A (TbpA) prior to human transferrin protein (hTf) binding” Turk. J. Chem, 45, 1146-1154, 2021.
Çubuk, H., Özbil, M. “Comparison of Clinically Approved Molecules on SARS-CoV-2 Drug Target Proteins: A Molecular Docking Study” Turk. J. Chem, 45, 35-41, 2021. doi:10.3906/kim-2008-35 journals.tubitak.gov.tr/chem/issues/kim-21-45-1/kim-45-1-5-2008-35.pdf
Cubuk, H., Ozbil, M., Hatir, P.C. “Computational analysis of functional monomers used in molecular imprinting for promising COVID-19 detection” Comput. Theor. Chem., 11325, 2021. https://doi.org/10.1016/j.comptc.2021.113215. www.sciencedirect.com/science/article/pii/S2210271X21000748
Fareed, F.M.A, Korulu, S., Özbil, M., Çapan, Ö.Y. “HNF1A-MODY Mutations in Nuclear Localization Signal Impair HNF1A-Import Receptor KPNA6 Interactions” Protein J., 2021. doi:10.1007/s10930-020-09959-0 link.springer.com/article/10.1007/s10930-020-09959-0
2020
Osipitan, O., Yildiz-Kutman, B., Watkins, S., Brown, P., & Hanson, B. (2020). Impacts of repeated glyphosate use on growth of orchard crops. Weed Technology, 34(6), 888-896. doi:10.1017/wet.2020.85
Sevinçli, Z.Ş., Duran, G.N., Özbil, M., Karalı, N. “Synthesis, molecular modeling and antiviral activity of novel 5-fluoro-1H-indole-2,3-dione 3-thiosemicarbazones ” Bioorg. Chem., 2068, 31499, 2020. https://onlinelibrary.wiley.com/doi/full/10.1002/ardp.201900028
Muge Isleten Hosoglu, Yonca Karagul-Yuceer, Onur Guneser. Aroma characterization of heterotrophic microalgae Crypthecodinium cohnii using solid-phase microextraction and gas chromatography–mass spectrometry/olfactometry during different growth phases. Algal research, Vol. 49. 2020.
Katarzyna SWIĄDER, Karina BIALEK, Muge ISLETEN HOSOGLU. Varieties of date palm fruits (phoenixdactylifera l.), their characteristics and cultivation. Technological Progress In Food Processing, 173-179. 2020.
Arisan ED, Dart A, Grant GH, et al. The Prediction of miRNAs in SARS-CoV-2 Genomes: hsa-miR Databases Identify 7 Key miRs Linked to Host Responses and Virus Pathogenicity-Related KEGG Pathways Significant for Comorbidities. Viruses. 2020;12(6):E614. Published 2020 Jun 4. doi:10.3390/v12060614.https://www.mdpi.com/1999-4915/12/6/614
Adacan K, Obakan-Yerlikaya P, Arisan ED, Coker-Gurkan A, Kaya RI, Palavan-Unsal N. Epibrassinolide-induced autophagy occurs in an Atg5-independent manner due to endoplasmic stress induction in MEF cells [published online ahead of print, 2020 May 24]. Amino Acids. 2020;10.1007/s00726-020-02857-w. doi:10.1007/s00726-020-02857-w. https://link.springer.com/article/10.1007/s00726-020-02857-w
Arısan ED, Rencuzogullari O, Coban M, Sevgin B, Pinar Obakan Yerlikaya, Ajda Çoker Gürkan, and Narçin Palavan Unsal The role of the PI3K/AKT/mTOR signaling axis in the decision of the celastrol-induced cell death mechanism related to the lipid regulatory pathway in prostate cancer cells, Phytotherapy letters
Elif Damla Arisan, Ozge Rencuzogullari; Buse Keskin; Guy H. Grant; Pinar Uysal-Onganer. Wnt-11 expression regulates epithelial-mesenchymal transition and neuroendocrine-like differentiation via JNK pathway in prostate cancer. Biology (ISSN 2079-7737). https://www.mdpi.com/2079-7737/9/7/142
Elif Damla Arisan, Pinar Uysal Onganer, Sigrun Lange. Putative roles for Peptidylarginine Deiminases in COVID-19. International Journal of Molecular Sciences. Peptidylarginine Deiminases and Protein Deimination in Health and Disease Special Issue. 28 June 2020. https://www.mdpi.com/1422-0067/21/13/4662
Arisan, E.D., Freitas, I.L., Pazoki, K., Rahim, S. and Uysal Onganer, P. 2020. The Role of Differentially Expressed miRNAs and Potential miRNA-mRNA Regulatory Network in Prostate Cancer Progression and Metastasis. Biomedical Journal of Technical and Scientific Research. 25 (4), pp. 19382 19387. doi:10.26717/BJSTR.2020.25.004241. https://biomedres.us/fulltexts/BJSTR.MS.ID.004241.php
Arisan, E.D., Rencuzogullari, O., Freitas, I.L., Radzali, S., Keskin, B., Kothari, A., Warford, A. and Uysal Onganer, P. 2020. Upregulated Wnt-11 and miR-21 Expression Trigger Epithelial Mesenchymal Transition in Aggressive Prostate Cancer Cells . Biology. 9, p. 52. doi:10.3390/biology9030052. https://www.mdpi.com/2079-7737/9/3/52
2016
Kandemir B, Dag U, Gungor BB, Durasi IM, Erdogan B, Kayacan Y, Sahin E, Sezerman U, Aksan Kurnaz I (2016). Identification of novel transcriptional targets of Pea3 in SH-SY5Y neuroblastoma cells. PLoS One 12(2):e0170585.http://dx.doi.org/10.1371/journal.pone.0170585
