2023

Cetin, E.; Guclu, T.F.; Kantarcioglu, I.; Gaszek, I.K.; Toprak, E.; Atilgan, A.R.; Dedeoglu, B.;* Atilgan, C.* Kinetic Barrier to Enzyme Inhibition Is Manipulated by Dynamical Local Interactions in E. coli DHFR. J. Chem. Inf. Model, 2023, online.

Emirik, Ö.F.; Şanlı, C.; Ahsen, V.; Gürek, A.G.; Dedeoglu, B.* Theoretical investigation of the hydrolysis and DNA binding of platinum (II) complexes of imidazolidine dioximes. Mol. Phys., e2236244.

Dedeoglu, B.; Gürek, A.G.; Zorlu, Y.; Ayhan, M.M.; Engineering supramolecular helical assemblies via interplay between carbon (sp) tetrel and halogen bonding interactions. Phys. Chem. Chem. Phys. 25 (16), 11493-11500.

2022

Koca Fındık, B.;
Çilesiz, U.; Bali, S.K.; Atılgan, C.; Aviyente, V.; Dedeoglu, B.* Computational Assessment of Iron Release from the N- and C- Lobes of Human Serum Transferrin. OBC, 2022, 20, 8766-8774.

Haghmoradi, N.; Sarı, Z.T.; Kırlıoğlu, A.C.; Yarar Kaplan, B.; Dedeoglu, B.; Zahedimaram, P.; Abdolhosseinzadeh, S.; Alkan Gürsel, S. Co2+, Fe2+, and Ni2+: Modifiers for Photocatalytic Deposition of Highly Active Pt on Graphene-based Supports. ACS Appl. Energy Mater. 2022, 5, 11, 13939–13951.

Soysal, E.N.; Findik, V.; Dedeoglu, B.; Aviyente, V.; Tantillo, D.J. Theoretical Investigation of the Biogenetic Pathway for Formation of Antibacterial Indole Alkaloids from Voacanga Africana. ACS Omega, 2022, 7, 35, 31591–31596.

Topaloğlu-Aksoy, B.; Dedeoglu, B.; Zorlu, Y.; Ayhan, M.M.; Çoşut, B. Exploring Halogen···Halogen Interactions in Supramolecular Self-Assembly of BODIPY Networks. CrystEngComm, 2022, 24, 5630-5641.

2021

Tunç, G.; Canımkurbey, B.; Dedeoglu, B.; Zorlu, Y.; Eryılmaz, S.; Gürek, A.G. Synthesis, Crystal Structure and Electronic Applications of Monocarboxylic Acid Substituted Phthalonitrile Derivatives Combined with DFT studies. J.Mol. Struct., accepted.

Ayhan, M.M; Özcan, E.; Dedeoglu, B.; Chumakov, Y.; Zorlu, Y.; Coşut, B. Carbon (sp3) tetrel bonding mediated BODIPY supramolecular assembly via unprecedented synergy of Csp3⋯N and Csp3⋯F pair interactions. CrystEngComm, 2021, 23, 268-272.

Özcan, E.; Dedeoglu, B.; Chumakov, Y.; Gürek, A.G; Zorlu, Y.; Coşut, B.; Ayhan, M.M Halogen‐Bonded BODIPY Frameworks with Tunable Optical Features. Chem. Eur.J., 2021, 27, 1603 –1608.

2020

Avcı, O.N.; Catak, S.; Dereli, B.; Aviyente, V.; Dedeoglu, B. Elucidation of the Mechanism of Silver-Catalyzed Inverse Electron-Demand Diels-Alder (IEDDA) Reaction of 1,2-Diazines and Siloxy Alkynes. ChemCatChem, 2020, 12, 366–372.

2018

Kocasoy, V., Dedeoglu, B., Demir-Ordu, Oznur, Aviyente, V. Influence of odd–even effect and intermolecular interactions in 2D molecular layers of bisamide organogelators. RSC Advances, 2018, 8, 35195.

2017
Abdizadeh, H.; Atilgan, A.R.; Atilgan, C.; Dedeoglu, B. Computational approaches for deciphering equilibrium and kinetic properties of iron transport proteins. Metallomics, 2017, 9, 1513-1533.

Ugur, I.; Agopcan Cinar, S.; Dedeoglu, B.; Aviyente, V.; Hawthorne, M. F.; Liu, P.; Liu, F.; Houk, K.N.; Jiménez-Osése, G. 1,3-Dipolar Cycloaddition Reactions of Low-Valent Rhodium and Iridium Carboranyl and Cyclopentadienyl Complexes with Arylnitrile N-Oxides. Journal of Organic Chemistry, 2017, 82, 5096–5101.

2016
Agopcan Cinar, S.; Guven, M. N.; Eren, T. N.; Cesur, B.; Aleksanyan, M.; Dedeoglu, B.; Okte, N.; Aviyente, V.; Morlet-Savary, F.; Lalevee, J. Structure-Reactivity Relationships of Novel Monomeric Photoinitiators. Journal of Photochemistry and Photobiology A: Chemistry, 2016, 329, 77-87.

Tanriver, G.; Dedeoglu, B.; Catak, S.; Aviyente, V. Computational Studies on Cinchona Alkaloid-Catalyzed Asymmetric Organic Reactions. Accounts of Chemical Research, 2016, 49, 1250 – 1262.

2015
Dedeoglu, B.; Catak, S.; Yildirim, A.; Bolm, C.; Aviyente, V. Cinchona Alkaloid Catalyzed Asymmetric Desymmetrization of meso-Cyclic Anhydrides: The Origins of Stereoselectivity. ChemCatChem, 2015, 7, 4173 – 4179.

2014
Schmitt, B.; Sabanci, N.; Dedeoglu, B.; Aviyente, V.; Hosten, E.; Gerber, T.I.A.; Habarurema, G. Rhenium(V) Complexes Containing Mono- and Tridentate Imido Ligands: Crystal Structures, Spectroscopic Results and DFT Optimization. S. Afr. J. Chem., 2014, 67, 189–197.

Dedeoglu, B.; Monari, A.; Etienne, T.; Aviyente, V.; Özen, A.S. Detection of Nitroaromatic Explosives Based on Fluorescence Quenching of Silafluorene- and Silole-Containing Polymers: A Time Dependent-Density Functional Theory Study. J. Phys. Chem. C, 2014, 118, 23946 - 23953.

Dedeoglu, B.; Aviyente, V.; Özen, A.S. Computational Insight into the Explosive Detection Mechanisms in Silafluorene- and Silole-Containing Photoluminescent Polymers. J. Phys. Chem. C, 2014, 118, 6385−6397.

2013
Dedeoglu B., Ugur I., Degirmenci I, Aviyente V., Barcin B., Cayli G., Acar H., First RAFT polymerization of captodative 2-acetamidoacrylic acid (AAA) monomer: An experimental and theoretical study. Polymer, 2013, 54, 5122-5132.

2012
Cenker, Ç. C.; Bomans, P. H. H.; Friedrich, H.; Dedeoglu, B.; Aviyente, V.; Olsson, U.; Sommerdijk, N.A.J.M.; Bucak, S. Peptide nanotube formation: a crystal growth process. Soft Matter, 2012, 8, 7463-7470.

Ince, H.H.; Dedeoglu, B.; Gul, S.; Aviyente, V.; Coldham, I. Selectivity in the aggregates of the chiral organolithium N-Boc-2-lithiopiperidine with a chiral ligand: A DFT study. Molecular Physics, 2012, 110, 353–359.

2010
Dedeoglu, B.; Catak, S.; Houk, K.N.; Aviyente, V. A Theoretical Study of the Mechanism of the Desymmetrization of Cyclic meso-Anhydrides by Chiral Amino Alcohols. ChemCatChem, 2010, 2, 1122–1129.

Go to CourseWeb pages

• CHEM 108 General Chemistry II
• CHEM 308 Physical Chemistry I

• Third Cycle (Doctoral): Kimya, Boğaziçi Üniversitesi, 2015
• Second Cycle (Master's): Kimya, Boğaziçi Üniversitesi, 2009
• First Cycle (Undergraduate): Kimya, Boğaziçi Üniversitesi, 2007

2016 Bogazici University Outstanding Doctoral Thesis Award

As Visiting Researcher:
2013 July, University of Lorraine
2008 August, University of California, Los Angeles